[phenixbb] fwd: Resolve on Mac
Miguel Ortiz Lombardia
miguel.ortiz-lombardia at afmb.univ-mrs.fr
Mon Apr 27 12:51:15 PDT 2009
Dear Jim and others,
Jumping on this thread probably too late...
I found the same problem just two weeks ago. Never found the reason,
but after installing the 1.4-4 prerelease version of phenix, this
error vanished. In our case, the job concerned H32 data with rather
big cell dimensions. Version 1.4-3 crashed with the memory problem
after having tried resolve_extra_huge. In version 1.4-4,
resolve_extra_huge managed to find all the memory required.
Le 23 avr. 09 à 19:27, Nathaniel Echols a écrit :
> (Forwarded on behalf of James Naismith - I have no idea why the
> server rejected this message.)
> Begin forwarded message:
>> From: James Naismith <naismith at st-andrews.ac.uk>
>> Date: April 23, 2009 9:24:05 AM PDT
>> To: phenixbb at phenix-online.org
>> Subject: Resolve on Mac
>> This is not a bug but some feature of the new Mac (or perhaps mine
>> is broken).
>> Tom Terwilliger can run the same job on his older Mac and on Linux.
>> However, with my new Mac resolve complains that it can't allocate
>> enough memory.
>> Since my machine has 8GB of memory and Tom's has 2 GB, it is
>> something to do with the esetup either Mac or Phenix.
>> I am a newbie on the Mac, I wondered if anyone could help me. (Tom
>> is also new to Mac and agreed to my posting here).
>> Hardware Overview:
>> Model Name: MacBook Pro
>> Model Identifier: MacBookPro5,2
>> Processor Name: Intel Core 2 Duo
>> Processor Speed: 2.93 GHz
>> Number Of Processors: 1
>> Total Number Of Cores: 2
>> L2 Cache: 6 MB
>> Memory: 8 GB
>> Bus Speed: 1.07 GHz
>> Boot ROM Version: MBP52.008E.B00
>> SMC Version: 1.42f4
>> Serial Number: W89090Y82QT
>> Sudden Motion Sensor:
>> State: Enabled
>> James H. Naismith FRSE | mailto:naismith at st-andrews.ac.uk
>> Professor of Chemical Biology | mailto:jhn at st-andrews.ac.uk
>> Centre for Biomolecular Sciences|Office: (44) or (0) 1334463792
>> The North Haugh |Secretary: (44) or (0) 1334463401
>> The University Sciences |Fax: (44) or (0) 1334467229
>> Fife KY16 9ST U.K. |http://www.st-and.ac.uk/~strucbio
>> The University of St Andrews is a charity registered in Scotland :
>> No SC013532
> This message has been scanned for viruses and
> dangerous content by MailScanner, and is
> believed to be clean.
> phenixbb mailing list
> phenixbb at phenix-online.org
Miguel Ortiz Lombardía
Architecture et Fonction des Macromolécules Biologiques
UMR6098 ( CNRS, U. de Provence, U. de la Méditerranée )
163 Avenue de Luminy
13288 Marseille cedex 9
Tel : +33(0) 491 82 55 93
Fax: +33(0) 491 26 67 20
e-mail: miguel.ortiz-lombardia at afmb.univ-mrs.fr
This message has been scanned for viruses and
dangerous content by MailScanner, and is
believed to be clean.
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the phenixbb