[phenixbb] placing ligands in coot with phenix.elbow output

Paul Emsley paul.emsley at bioch.ox.ac.uk
Wed Aug 20 14:09:22 PDT 2008

Feldman III, George Franklin wrote:

> I am having difficulties with my ligand. My ligand is an FMN (flavin 
> mononucleotide) and its pdb file was originally created using PRODRG. I 
> used the DRGFIN.PDB output file to run elbow (phenix.elbow DRGFIN.PDB 
> --opt). The output contains hydrogens, which as we all know do not work 
> well with coot.

Dear Trey and other phenix+coot users,

Recent pre-release versions of Coot are (as far as I can tell) PDB 
version 3.0 compliant. If I wasn't going to Japan tomorrow, I'd make the 
current pre-release the actual 0.5 release.



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