[phenixbb] MemoryError

Peter Zwart PHZwart at lbl.gov
Sun Aug 17 23:11:53 PDT 2008

Hi Yingjie ,

Send me the log file please. you might want to refine in a primitive
setting. that will save some/a lot of time.


2008/8/17 Yingjie Zhou <yzhou83 at uwo.ca>:
> Hello every one,
> Did any of you experience the problem 'MemoryError' when doing
> phenix.refine? I had a perfect twin case and I used phenix refine to handle
> this. But I  have met the problem 'MemorryError' and the refinement was
> stalked after long time running of phenix. Here is the basic info:
> Resolution 2.2A
> space group f23
> the protein size ~320AA
> my computor memory 4GB.
> If someone is kind enough to really help, I can send her/him the log file.
> Yingjie
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> phenixbb at phenix-online.org
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P.H. Zwart
Beamline Scientist
Berkeley Center for Structural Biology
Lawrence Berkeley National Laboratories
1 Cyclotron Road, Berkeley, CA-94703, USA
Cell: 510 289 9246
BCSB: http://bcsb.als.lbl.gov
PHENIX: http://www.phenix-online.org
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