[phenixbb] phenix.twin_map_utils AssertionError

hari jayaram harijay at gmail.com
Thu Aug 14 06:00:52 PDT 2008

Hi I am trying to run the following command
phenix.twin_map_utils data.file=cy_p10_2_28.1_unique1.mtz
model.file=cy_p10_2_28.1.pdb obs_labels=F_p10-2,SIGF_p10-2

When I run phenix.twin_map_utils from phenix version 1.3 final or from the
newest cci_aps. I get the following AssertionError ( see below).

I think my mtz file is kosher because phenix.refine with the twin_law option
handles it well and I can refine with a twin law.

Is there something wrong in the syntax or the file.
I am attaching the log file with the Assertion Error to this email.
Thanks for your help

Overall and bulk solvent scale paranmeters and twin fraction estimation
Traceback (most recent call last):
line 7, in <module>
"/Users/hari/cci_apps_sources/mmtbx/mmtbx/twinning/twin_map_utils.py", line
306, in run
  File "/Users/hari/cci_apps_sources/mmtbx/mmtbx/twinning/twin_f_model.py",
line 946, in __init__
    assert self.f_obs.indices().all_eq( self.free_array.indices() )
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