[phenixbb] phenix pdp files and coot - FIXED

nihmmayerm mayerm at mail.nih.gov
Wed Aug 13 13:27:48 PDT 2008


The problem was that coot choked on the TER and BREAK lines in the PDB,
once I removed these 0.4.1 reads the phenix PDBs fine.


I've just finished refinements with latest version of phenix


in which I used riding hydrogens added with reduc (Molprobity) version
and TLS - so I have anisou records - and a bunch of acs.

When I open files in coot (coot/0.4.1/bin/coot) I see only 1 chain (I  
have a dimer
chain A and B) and no solvent or other heteroatoms. The file displays  
fine in
pymol - but I want to rebuild with coot.

Any ideas ? I'm using the SBGrid install of coot, and a local  
installation of phenix.

Thanks - Mark

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