[phenixbb] riding hydrogens

Jianghai Zhu jzhu at idi.harvard.edu
Tue Aug 5 13:38:28 PDT 2008


I used phenix.reduce to add riding hydrogens.  After phenix.refine,  
the structure got a good score from MolProbity.  However, if I  
stripped the riding hydrogens from the structure and let MolProbity to  
add hydrogens before the analysis, I got a much worse score,  
especially the clash score.  Does phenix.refine refine the hydrogen  

-- Jianghai

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