[phenixbb] Ignoring SegIDs

Stephen Graham stepheng at strubi.ox.ac.uk
Wed Apr 9 07:13:50 PDT 2008

Hi all,

Apologies if this is a dumb question, but...  Is there a way to get
phenix.refine to ignore segids?  I ask because COOT seems to be
blithely unaware of segids and they have a habit of disappearing when
one is rebuilding a model, resulting in very odd geometries when the
side chain of a residue is in segment ' ' and the main chain is in
segment 'A'.

Alternatively, is there a 'convert chain IDs to segids' option like in
CNS?  Basically, I would like the segids removed/fixed/ignored
automagically at the start of refinement (since I never use them for
anything useful anyway).



Dr Stephen Graham
Nuffield Medical Fellow
Division of Structural Biology
Wellcome Trust Centre for Human Genetics
Roosevelt Drive
Oxford OX3 7BN
United Kingdom
Phone: +44 1865 287 549

More information about the phenixbb mailing list