[phenixbb] phenix.refine python error !!

john kryst protkryst at gmail.com
Thu Oct 11 23:07:01 PDT 2007

Hi all !!!

               I have recently updated phenix version to phenix-1.3b-rc3.
After that when i run phenix.refine it runs properly. But while writing the
pdb file it is giving the following error.

Traceback (most recent call last):
  File "/usr/local/phenix-1.3b-rc3/phenix/phenix/command_line/refine.py",
line 5, in <module>
    command_line.run(command_name="phenix.refine", args=sys.argv[1:])
  File "/usr/local/phenix-1.3b-rc3/phenix/phenix/refinement/command_line.py",
line 89, in run
  File "/usr/local/phenix-1.3b-rc3/phenix/phenix/refinement/driver.py", line
1101, in write_refined_pdb
    pdb_header.write_remark_3(info = m_info, out = f)
  File "/usr/local/phenix-1.3b-rc3/mmtbx/mmtbx/pdb_header.py", line 21, in
    info.show_remark_3(out = out)
  File "/usr/local/phenix-1.3b-rc3/mmtbx/mmtbx/model_statistics.py", line
483, in show_remark_3
    self.data_x.show_remark_3(out = out)
  File "/usr/local/phenix-1.3b-rc3/mmtbx/mmtbx/f_model.py", line 2034, in
    bin.n_work, bin.n_free, bin.r_work*100., bin.r_free*100.)
TypeError: unsupported operand type(s) for *: 'NoneType' and 'float'

I am using fedora 5, python 2.4.2. I have used
phenix-installer-1.3b-rc3-intel-linux-2.4.tar. It was working fine in the
last build. Google'ing the error didn't help much.

Thanks for your inputs.

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