[phenixbb] [Spam] Re: NAG-ASN link

Jianghai Zhu jzhu at cbr.med.harvard.edu
Sun Oct 7 09:26:25 PDT 2007

There is a little problem here.  The ASN residues which are not  
glycosylation sites have both HD21 and HD22.  If I simply replace  
HD22 with HD21, those ASN residues will have two HD21 atoms. So it is  
more complicated than one line sed script.


Jianghai Zhu, Ph.D
CBR Institute for Biomedical Research
Department of Pathology
Harvard Medical School
200 Longwood Ave., Boston, MA 02115
Ph: 617-278-3211
Fx: 618-278-3232

On Oct 7, 2007, at 12:20 PM, Ralf W. Grosse-Kunstleve wrote:

> Thanks for reporting this problem!
> While we work on a fix, you can easily patch your PDB files like this:
>   sed 's/HD22 ASN/HD21 ASN/' good.pdb > better.pdb
> Ralf

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