[phenixbb] sugar links in phenix.refine

Ralf W. Grosse-Kunstleve rwgk at cci.lbl.gov
Thu Jun 21 13:31:04 PDT 2007

> Will it recognized NAS-ASN, beta1-4, alpha1-4, etc linkages between sugars?

This is not automated (mainly out of fear of accidentally doing the 
wrong thing). You have to specify the linkages using the


scope as explained here:

    o phenix.refine  [Documentation] 


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