[phenixbb] CCI Apps

Noinaj noinaj at uky.edu
Fri Jan 26 13:38:03 PST 2007


Quick question.  I am trying to refine occupancy of a ligand and was attempting to do this using the method outlined under the CCI Apps documentation for phenix.refine.  

a.. Refinement of one occupancy factor per selected group of atoms (group occupancy refinement):

% phenix.refine data.hkl model.pdb strategy=group_occupancies \
  refine.occupancies.group="chain A and resid 1"Yet, when I type the commands, I keep getting an error saying that something is wrong with my commands: strategy, group, etc.  I have not (at least I don't recall) loading the updated CCI Apps and only have what was installed with Phenix 1.24b installation.  

Am I doing something wrong here or do I need to update the CCI Apps?

Thanks in advance for all feedback!



Nicholas Noinaj
University of Kentucky School of Medicine
Department of Molecular and Cellular Biochemistry
Biomedical Biological Sciences Research Building, Rm 236
741 S. Limestone
Lexington, Ky 40536
Lab:  859-323-8183
Home:  859-228-0978
noinaj at uky.edu

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