[phenixbb] R, Rfree, and wxu_scale

Jianghai Zhu jzhu at cbr.med.harvard.edu
Sat Aug 4 23:00:24 PDT 2007

In the manual, I have also seen examples to manually set the target  
weight (target_weights.fix_wxc and target_weights.fix_wxu).  But  
there is no explanations for their uses.  What kind of effects would  
they cause?


Jianghai Zhu, Ph.D
CBR Institute for Biomedical Research
Department of Pathology
Harvard Medical School
200 Longwood Ave., Boston, MA 02115
Ph: 617-278-3211
Fx: 618-278-3232

On Aug 4, 2007, at 11:31 PM, Pavel Afonine wrote:

> We make sure the default protocols are correct. The correctness of  
> user
> customized protocols is user's responsibility to verify; however we  
> are
> free to provide some guidance here.
> Pavel.
> Jianghai Zhu wrote:
>> Yes, yes.  But before one admits the model with the higher Rfree is
>> the more accurate model, one must make sure the refinement  
>> protocol is
>> correct.
>> Jianghai
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