[phenixbb] Problems in installation Phenix1.1a on Linux redhat F4

Cheng Luo, Ph.D. cluo at wistar.org
Fri Jan 6 19:09:27 PST 2006

Dear Phenix users,

I am a new user of phenix. When I install it in a new machine installed Linux F4, I meet a problem in gtk. I paste the information( the reported err is in red words).

generating PHENIX environment setup script
creating /marmor9/pub/bin/phenix-1.1a/phenix_env
generating libtbx environment additions
creating $PHENIX_BUILD/dispatcher_include_phenix.sh
setting environment
configuring PHENIX components

/marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/bin/gtk-query-immodules-2.0: error while loading shared libraries: /marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/libgdk-x11-2.0.so.0: cannot restore segment prot after reloc: Permission denied
generating gdk-pixbuf.loaders file"

.....other is ok

After installation, i source the env and run with phenix command, it told me these errors:
  File "/marmor9/pub/bin/phenix-1.1a/phenix/wxGUI/wxPhenix.py", line 11, in ?
    from wxPython.wx import *
  File "/marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/python2.4/site-packages/wx-2.5.3-gtk2-ansi/wxPython/__init__.py", line 10, in ?
    import _wx
  File "/marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/python2.4/site-packages/wx-2.5.3-gtk2-ansi/wxPython/_wx.py", line 3, in ?
    from _core import *
  File "/marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/python2.4/site-packages/wx-2.5.3-gtk2-ansi/wxPython/_core.py", line 15, in ?
    import wx._core
  File "/marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/python2.4/site-packages/wx-2.5.3-gtk2-ansi/wx/__init__.py", line 42, in ?
    from wx._core import *
  File "/marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/python2.4/site-packages/wx-2.5.3-gtk2-ansi/wx/_core.py", line 4, in ?
    import _core_
ImportError: /marmor9/pub/bin/phenix-1.1a/build/intel-linux/python/lib/libgdk-x11-2.0.so.0: cannot restore segment prot after reloc: Permission denied

Then I share this disk and source and run in another machine install red-hat 9, it did work. So maybe some library configurations are different, but since I have no too much experience about it. Is it possible for your expert give me some suggestion?

Thank you in advance for your any suggestions!

Best regards, 

Cheng Luo, Ph.D.

Cheng Luo, Ph.D.
Marmorstein's Lab              Room 327,3601 Spruce StreetThe Wistar Institute   PA(19104) USA                    Tel:215-898-2304                  
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